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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
383
total RNA-seq
242
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
WGBS
32
DNase-seq
22
pCHi-C
14
Hi-C
10
RRBS
4
GRO-seq
2
Capture-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
574
Transcription
331
DNA accessibility
14
3D chromatin structure
11
DNA methylation
Target of assay
3
control
Date released
174
May, 2021
147
May, 2020
104
February, 2023
93
May, 2022
68
February, 2021
59
September, 2020
48
July, 2018
43
April, 2018
41
September, 2018
31
July, 2019
24
June, 2019
21
August, 2021
18
October, 2019
15
February, 2018
9
March, 2020
8
January, 2021
7
August, 2017
7
August, 2020
7
December, 2019
6
November, 2020
5
November, 2019
5
September, 2017
4
August, 2018
4
January, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
512
bam
510
bigWig
395
tsv
330
fastq
112
zippedFastqFolder
91
bed narrowPeak
55
bigBed narrowPeak
40
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
11
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bedgraph
6
bed bed3
4
hdf5
3
cool
3
txt
2
csv
2
ibed
1
tar
Organism
958
Homo sapiens
Biosample type
1843
tissue
762
primary cell
196
in vitro differentiated cells
177
cell line
7
stem cell
Organ
269
epithelium
229
pancreas
57
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
9
heart
8
blood
8
bodily fluid
7
embryo
5
vein
4
musculature of body
3
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
560
AMP
277
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
559
hg19
474
GRCh38
4
hg18
Lab
541
AMP-T2D consortium
277
Klaus Kaestner, Upenn
132
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
1
ITG
Audit category:
137
inconsistent ontology term
33
audit script error
assay_title!
WGBS
ChIP-seq
BIOSAMPLE
ASSAY
958 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
GRO-seq
Capture-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
35
12
1
monocyte
54
15
1
1
pancreatic beta cell
21
23
12
1
exocrine cell
39
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in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
adipocyte
5
8
1
1
embryonic stem cell
7
6
1
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