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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
DNase-seq
22
ChIP-seq
4
ATAC-seq
4
Hi-C
2
Capture-C
2
total RNA-seq
1
pCHi-C
Assay category
31
DNA accessibility
22
DNA binding
4
3D chromatin structure
2
Transcription
Target of assay
11
histone
11
histone modification
6
narrow histone mark
6
transcription factor
5
broad histone mark
5
control
Date released
24
June, 2019
12
December, 2017
7
August, 2017
5
August, 2021
4
February, 2023
4
July, 2019
2
May, 2021
2
October, 2019
1
February, 2021
1
November, 2020
Available data
900
bam
872
bigWig
544
fastq
427
bed narrowPeak
395
tsv
140
tagAlign
126
bigBed narrowPeak
112
zippedFastqFolder
62
bed bed3+
50
bed broadPeak
50
bigBed broadPeak
11
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bedgraph
6
bed bed3
4
hdf5
3
cool
3
txt
2
csv
2
ibed
1
tar
Organism
62
Homo sapiens
Biosample type
205
tissue
37
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
21
connective tissue
21
epithelium
10
kidney
8
brain
8
vasculature
6
blood vessel
6
liver
3
embryo
3
heart
2
vein
1
eye
1
musculature of body
Project
62
AMP
Genome assembly (visualization)
55
hg19
49
GRCh38
Lab
58
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
Audit category:
8
inconsistent control read length
assay_title!
WGBS
BIOSAMPLE
ASSAY
62 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
Capture-C
total RNA-seq
pCHi-C
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 19 more…
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
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