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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
410
ChIP-seq
261
single cell RNA-seq
254
ATAC-seq
230
total RNA-seq
87
RNA microarray
83
snATAC-seq
WGBS
41
pCHi-C
26
DNase-seq
6
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
1
DNAme array
Assay category
491
Transcription
410
DNA binding
363
DNA accessibility
6
3D chromatin structure
3
DNA methylation
Target of assay
209
control
197
histone
197
histone modification
109
broad histone mark
88
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
229
August, 2021
150
February, 2023
132
February, 2021
120
May, 2022
107
August, 2017
87
October, 2019
80
May, 2020
76
November, 2017
59
September, 2020
47
September, 2023
40
May, 2024
31
June, 2019
29
October, 2018
25
February, 2020
24
May, 2021
23
May, 2019
22
March, 2020
19
April, 2020
16
January, 2021
15
April, 2019
14
May, 2023
12
December, 2017
10
October, 2017
7
August, 2020
5
July, 2019
4
December, 2018
4
July, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
1
August, 2022
1
January, 2019
1
March, 2023
1
September, 2018
Available data
277
bam
250
fastq
214
bed narrowPeak
170
tsv
156
txt
134
tagAlign
126
bigWig
112
zippedFastqFolder
75
bigBed narrowPeak
64
xls
24
bed broadPeak
23
bed bed3+
23
bigBed broadPeak
8
csv
1
bedpe bed3+
1
hic
Organism
1405
Homo sapiens
Biosample type
995
tissue
413
primary cell
131
cell line
97
in vitro differentiated cells
7
stem cell
Organ
218
kidney
202
pancreas
195
heart
135
epithelium
122
brain
90
liver
89
bone element
67
blood vessel
67
vasculature
64
connective tissue
58
adipose tissue
46
artery
27
eye
25
limb
22
musculature of body
20
lung
12
nerve
9
spleen
8
blood
8
bodily fluid
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1014
AMP
274
HPAP
53
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
hg19
2379
GRCh38
Lab
800
AMP-T2D consortium
274
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
58
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
99
inconsistent ontology term
35
audit script error
Audit category:
1
missing controlled_by
assay_title!
WGBS
assembly!
hg19
BIOSAMPLE
ASSAY
1408 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
DNAme array
tissue
kidney
7
64
75
49
6
islet of Langerhans
40
26
32
7
4
1
4
bone element
84
liver
62
1
20
1
left cardiac atrium
40
18
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primary cell
Langerhans cell
85
48
pancreatic alpha cell
6
29
42
exocrine cell
39
pancreatic beta cell
6
16
11
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
1
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