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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
97
total RNA-seq
87
single cell RNA-seq
72
ChIP-seq
56
snATAC-seq
WGBS
17
pCHi-C
10
RRBS
4
DNase-seq
4
Hi-C
1
DNAme array
1
FAIRE-seq
Assay category
212
DNA accessibility
184
Transcription
72
DNA binding
11
DNA methylation
4
3D chromatin structure
Target of assay
39
histone
39
histone modification
32
control
26
broad histone mark
13
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
102
May, 2020
93
May, 2022
88
February, 2023
57
May, 2021
56
September, 2020
40
February, 2021
17
August, 2017
13
July, 2019
11
October, 2019
8
January, 2021
8
June, 2019
3
November, 2017
1
August, 2021
1
May, 2019
1
November, 2018
1
September, 2018
Available data
174
fastq
112
zippedFastqFolder
94
bigWig
84
bam
34
bed narrowPeak
12
tsv
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3+
hic
4
bed broadPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
2
csv
2
tagAlign
1
tar
Organism
500
Homo sapiens
Biosample type
896
tissue
500
primary cell
196
cell line
125
in vitro differentiated cells
7
stem cell
Organ
129
epithelium
104
pancreas
13
vasculature
11
blood vessel
8
blood
8
bodily fluid
8
kidney
8
vein
7
brain
7
connective tissue
3
heart
3
liver
3
musculature of body
2
eye
1
bone element
1
bone marrow
Project
264
HPAP
212
AMP
24
T1D
Genome assembly (visualization)
623
hg19
GRCh38
Lab
264
Klaus Kaestner, Upenn
177
AMP-T2D consortium
59
Kyle Gaulton, UCSD
Audit category:
27
audit script error
18
inconsistent ontology term
assay_title!
WGBS
files.file_type!
hic
assembly!
GRCh38
BIOSAMPLE
ASSAY
500 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
RRBS
DNase-seq
Hi-C
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
22
42
6
exocrine cell
39
CD8-positive, alpha-beta T cell
2
2
33
1
pancreatic beta cell
13
11
6
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