Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
total RNA-seq
109
ChIP-seq
100
single cell RNA-seq
49
ATAC-seq
27
DNase-seq
2
small RNA-seq
1
Hi-C
Assay category
252
Transcription
109
DNA binding
76
DNA accessibility
1
3D chromatin structure
Target of assay
100
histone
100
histone modification
55
narrow histone mark
45
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
72
September, 2018
65
May, 2021
48
July, 2018
47
June, 2019
45
May, 2020
43
April, 2018
31
August, 2017
22
October, 2019
18
July, 2019
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
1
March, 2023
Available data
525
bam
519
bigWig
261
bed narrowPeak
252
tsv
229
fastq
105
bigBed narrowPeak
tagAlign
45
bed broadPeak
45
bigBed broadPeak
30
bed bed3+
1
bed bed3
1
hic
Organism
438
Homo sapiens
Biosample type
1727
tissue
449
cell line
438
primary cell
247
in vitro differentiated cells
3
stem cell
Organ
222
epithelium
192
pancreas
32
connective tissue
28
kidney
22
vasculature
18
blood vessel
14
brain
12
vein
11
musculature of body
10
heart
8
liver
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
331
AMP
96
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
529
hg19
438
GRCh38
Lab
331
AMP-T2D consortium
96
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
36
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
WGBS
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
438 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
primary cell
monocyte
53
13
pancreatic alpha cell
10
7
12
13
pancreatic beta cell
10
7
12
10
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
4
8
12
5
+ See 75 more…
See all biosamples
Download