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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
39
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
203
DNA binding
45
DNA accessibility
Target of assay
197
histone
197
histone modification
104
broad histone mark
93
narrow histone mark
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
127
May, 2021
June, 2019
46
September, 2018
33
August, 2017
21
October, 2019
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2021
2
November, 2020
1
February, 2021
Available data
566
bigWig
554
bam
403
fastq
264
tsv
248
bed narrowPeak
112
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
248
Homo sapiens
Biosample type
821
tissue
404
cell line
248
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
88
epithelium
68
pancreas
17
vasculature
15
blood vessel
13
vein
10
kidney
6
brain
4
liver
3
connective tissue
Project
164
AMP
84
T1D
Genome assembly (visualization)
248
hg19
214
GRCh38
Lab
134
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
WGBS
month_released!
June, 2019
BIOSAMPLE
ASSAY
248 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
13
CD8-positive, alpha-beta T cell
30
pancreatic ductal cell
13
4
skeletal muscle myoblast
14
2
pancreatic beta cell
7
7
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