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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
245
total RNA-seq
225
ChIP-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
WGBS
17
pCHi-C
9
RRBS
6
Hi-C
5
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
434
Transcription
261
DNA accessibility
225
DNA binding
10
DNA methylation
6
3D chromatin structure
Target of assay
201
histone
201
histone modification
105
broad histone mark
96
narrow histone mark
23
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
June, 2019
48
July, 2018
43
April, 2018
42
February, 2021
26
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
541
bigWig
526
bam
397
fastq
262
tsv
231
bed narrowPeak
112
zippedFastqFolder
100
tagAlign
45
bigBed narrowPeak
17
bed broadPeak
17
bigBed broadPeak
9
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
953
Homo sapiens
Biosample type
2459
tissue
953
primary cell
595
cell line
394
in vitro differentiated cells
10
stem cell
Organ
339
epithelium
299
pancreas
vasculature
29
blood vessel
23
kidney
22
connective tissue
22
vein
16
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
471
AMP
277
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
560
hg19
471
GRCh38
Lab
436
AMP-T2D consortium
277
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
30
audit script error
29
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_title!
WGBS
month_released!
June, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
953 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
DNase-seq
small RNA-seq
DNAme array
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
13
35
12
1
pancreatic beta cell
21
13
23
12
1
CD8-positive, alpha-beta T cell
4
33
2
1
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