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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
74
single cell RNA-seq
71
ATAC-seq
70
ChIP-seq
WGBS
3
Hi-C
Assay category
155
Transcription
71
DNA accessibility
70
DNA binding
3
3D chromatin structure
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
12
control
Date released
72
September, 2018
41
August, 2017
39
May, 2022
37
February, 2023
37
July, 2018
33
April, 2018
19
September, 2020
7
August, 2020
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
252
fastq
194
bam
192
bigWig
102
tsv
68
bed narrowPeak
39
zippedFastqFolder
22
bigBed narrowPeak
3
bedpe bed3+
3
cool
3
hic
Organism
299
Homo sapiens
Biosample type
497
tissue
299
primary cell
92
cell line
3
in vitro differentiated cells
Organ
339
epithelium
299
pancreas
33
vasculature
29
blood vessel
23
kidney
22
connective tissue
22
vein
16
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
194
AMP
105
HPAP
Genome assembly (visualization)
192
GRCh38
185
hg19
Lab
194
AMP-T2D consortium
105
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
WGBS
month_released!
June, 2019
BIOSAMPLE
ASSAY
299 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
Hi-C
primary cell
pancreatic alpha cell
52
12
35
13
1
pancreatic beta cell
21
12
23
13
1
pancreatic acinar cell
4
12
9
8
1
pancreatic ductal cell
4
10
4
13
pancreatic endocrine cell
23
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