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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
92
ChIP-seq
72
ATAC-seq
70
single cell RNA-seq
WGBS
18
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
163
Transcription
92
DNA binding
91
DNA accessibility
7
3D chromatin structure
6
DNA methylation
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
61
September, 2018
39
May, 2022
37
February, 2023
33
April, 2018
33
July, 2018
33
October, 2019
29
August, 2017
20
June, 2019
19
September, 2020
13
July, 2019
7
August, 2020
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
242
bam
232
fastq
231
bigWig
110
tsv
106
bed narrowPeak
61
bigBed narrowPeak
39
zippedFastqFolder
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
359
Homo sapiens
Biosample type
359
primary cell
79
cell line
24
in vitro differentiated cells
15
tissue
Organ
359
epithelium
299
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
254
AMP
105
HPAP
Genome assembly (visualization)
227
hg19
225
GRCh38
Lab
254
AMP-T2D consortium
105
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
WGBS
BIOSAMPLE
ASSAY
359 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
35
12
1
pancreatic beta cell
21
13
23
12
1
pancreatic acinar cell
4
8
9
12
1
pancreatic ductal cell
4
13
4
10
endothelial cell of umbilical vein
17
2
2
1
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