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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
29
DNase-seq
22
ATAC-seq
1
FAIRE-seq
Assay category
52
DNA accessibility
47
DNA binding
Target of assay
47
histone
47
histone modification
26
narrow histone mark
21
broad histone mark
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
43
June, 2019
17
August, 2017
14
September, 2018
13
October, 2019
5
September, 2017
3
May, 2019
3
November, 2017
1
November, 2020
Available data
603
bigWig
599
bam
398
fastq
285
bed narrowPeak
264
tsv
112
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
99
Homo sapiens
Biosample type
496
tissue
99
primary cell
27
cell line
15
in vitro differentiated cells
Organ
56
epithelium
22
pancreas
19
vasculature
16
blood vessel
14
connective tissue
14
kidney
13
vein
9
musculature of body
8
brain
5
heart
2
eye
2
liver
Project
99
AMP
Genome assembly (visualization)
96
GRCh38
92
hg19
Lab
99
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
assay_title!
WGBS
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
99 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
skeletal muscle myoblast
12
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
mesenchymal stem cell
6
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