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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
218
ChIP-seq
197
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
WGBS
29
DNase-seq
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
283
DNA accessibility
218
DNA binding
10
3D chromatin structure
10
DNA methylation
Target of assay
199
histone
199
histone modification
106
broad histone mark
93
narrow histone mark
22
control
8
RNA binding protein
transcription factor
Date released
206
May, 2021
147
May, 2020
93
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
August, 2017
51
June, 2019
48
July, 2018
43
April, 2018
42
February, 2021
34
October, 2019
31
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
559
bigWig
543
bam
342
fastq
264
tsv
254
bed narrowPeak
112
zippedFastqFolder
88
tagAlign
82
bigBed narrowPeak
37
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
974
Homo sapiens
Biosample type
2404
tissue
974
primary cell
300
cell line
299
in vitro differentiated cells
10
stem cell
Organ
325
epithelium
258
pancreas
38
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
492
AMP
277
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
573
hg19
486
GRCh38
Lab
457
AMP-T2D consortium
277
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
assay_title!
WGBS
target.investigated_as!
transcription factor
month_released!
August, 2017
BIOSAMPLE
ASSAY
974 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
34
12
1
pancreatic beta cell
21
22
12
1
CD8-positive, alpha-beta T cell
4
33
2
1
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