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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
97
total RNA-seq
29
ATAC-seq
10
DNase-seq
6
single cell RNA-seq
2
FAIRE-seq
Assay category
220
DNA binding
103
Transcription
41
DNA accessibility
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
168
August, 2017
58
October, 2018
48
December, 2017
24
May, 2022
20
November, 2018
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1890
bam
1756
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
364
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
357
Homo sapiens
Biosample type
426
cell line
402
primary cell
364
tissue
141
in vitro differentiated cells
4
stem cell
Organ
209
pancreas
81
liver
40
adipose tissue
40
connective tissue
22
spleen
12
brain
Project
364
AMP
Genome assembly (visualization)
291
hg19
272
GRCh38
Lab
338
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
364 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
FAIRE-seq
tissue
islet of Langerhans
28
97
20
1
6
1
liver
67
2
body of pancreas
33
4
2
spleen
20
1
1
pancreas
16
1
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
right lobe of liver
10
1
1
white adipose tissue
12
brain
9
2
adipose tissue
2
cerebellum (Hemisphere)
1
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