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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
867
ChIP-seq
259
ATAC-seq
178
DNase-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
WGBS
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
867
DNA binding
469
DNA accessibility
177
Transcription
16
3D chromatin structure
11
DNA methylation
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
234
October, 2019
186
August, 2017
163
June, 2019
130
August, 2021
115
May, 2019
93
February, 2021
91
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
66
May, 2022
50
May, 2020
48
December, 2017
47
September, 2023
23
October, 2017
21
November, 2019
20
November, 2018
19
April, 2020
18
July, 2019
15
May, 2023
12
March, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1890
bam
1716
bigWig
tsv
944
bed narrowPeak
561
bigBed narrowPeak
367
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1625
Homo sapiens
Biosample type
1634
tissue
777
primary cell
542
cell line
263
in vitro differentiated cells
6
stem cell
Organ
287
kidney
242
brain
226
pancreas
203
liver
154
heart
117
blood vessel
117
vasculature
114
limb
100
bone element
84
connective tissue
83
adipose tissue
74
musculature of body
69
artery
51
eye
38
nerve
22
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1537
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
886
GRCh38
837
hg19
Lab
1323
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
files.file_type!
tsv
BIOSAMPLE
ASSAY
1634 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
27
75
13
49
59
6
1
1
1
islet of Langerhans
71
67
1
31
7
3
1
4
1
4
liver
145
20
2
20
1
1
1
bone element
84
body of pancreas
35
4
4
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