Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
Hi-C
12
ATAC-seq
Assay category
23
3D chromatin structure
12
DNA accessibility
Date released
10
February, 2023
10
March, 2020
4
October, 2019
3
October, 2022
2
August, 2021
2
February, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3374
bam
3112
bigWig
1777
bed narrowPeak
1594
tsv
1341
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
112
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
35
Homo sapiens
Biosample type
16
tissue
9
in vitro differentiated cells
7
primary cell
3
cell line
Organ
7
pancreas
6
connective tissue
6
epithelium
4
bone element
4
skeleton
3
blood vessel
3
heart
3
liver
3
vasculature
2
musculature of body
2
vein
1
brain
1
kidney
Project
31
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
34
hg19
3
GRCh38
Lab
28
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
1
inconsistent replicate
assay_title!
WGBS
BIOSAMPLE
ASSAY
35 results
search-icon
table-tab-icon
Clear Filters
Hi-C
ATAC-seq
tissue
islet of Langerhans
2
psoas muscle
2
acetabular part of hip bone
1
aorta
1
brain
1
+ See 9 more…
in vitro differentiated cells
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
osteoblast
1
pancreatic acinar cell
1
pancreatic alpha cell
1
+ See 1 more…
cell line
HepG2
1
1
EndoC_BH1
1
See all biosamples
Download