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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
46
ATAC-seq
WGBS
21
snATAC-seq
Assay category
67
DNA accessibility
52
Transcription
Date released
93
May, 2022
19
September, 2020
4
February, 2021
3
February, 2023
Available data
3374
bam
3152
bigWig
1817
bed narrowPeak
1594
tsv
1341
fastq
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
112
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
119
Homo sapiens
Biosample type
112
primary cell
7
in vitro differentiated cells
Organ
39
epithelium
39
pancreas
4
connective tissue
Project
112
HPAP
7
AMP
Genome assembly (visualization)
7
hg19
Lab
112
Klaus Kaestner, Upenn
4
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
assay_title!
WGBS
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
119 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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