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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
34
single cell RNA-seq
30
ATAC-seq
27
snATAC-seq
WGBS
Assay category
132
Transcription
57
DNA accessibility
Date released
76
February, 2023
41
September, 2020
39
February, 2021
24
May, 2022
7
August, 2020
1
March, 2019
1
October, 2017
Available data
270
bigWig
234
bed narrowPeak
205
bam
189
fastq
112
zippedFastqFolder
106
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
189
Homo sapiens
Biosample type
163
primary cell
26
tissue
Organ
89
pancreas
63
epithelium
Project
163
HPAP
26
AMP
Genome assembly (visualization)
19
hg19
11
GRCh38
Lab
AMP-T2D consortium
163
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
assay_title!
WGBS
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
189 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
7
exocrine cell
39
pancreatic beta cell
11
3
tissue
islet of Langerhans
6
20
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