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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
722
ChIP-seq
177
DNase-seq
128
ATAC-seq
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
923
Transcription
722
DNA binding
309
DNA accessibility
Target of assay
466
histone modification
465
histone
243
narrow histone mark
222
broad histone mark
167
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
193
May, 2020
186
October, 2019
168
August, 2017
163
June, 2019
116
July, 2018
115
May, 2019
79
April, 2019
74
October, 2018
69
November, 2017
64
August, 2021
55
July, 2019
48
December, 2017
39
November, 2019
38
May, 2021
24
May, 2022
20
November, 2018
15
October, 2017
9
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
1890
bam
1756
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
367
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1947
Homo sapiens
Biosample type
1954
tissue
609
primary cell
581
cell line
291
in vitro differentiated cells
3
stem cell
Organ
496
connective tissue
438
adipose tissue
425
pancreas
288
liver
226
brain
162
kidney
126
heart
113
limb
85
blood vessel
85
vasculature
66
bone element
43
musculature of body
42
nerve
34
artery
22
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
1952
AMP
2
T1D
Genome assembly (visualization)
1751
GRCh38
1648
hg19
Lab
1865
AMP-T2D consortium
64
Katalin Susztak, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
BIOSAMPLE
ASSAY
1954 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
islet of Langerhans
266
30
1
38
6
1
liver
147
122
2
1
kidney
27
13
64
1
bone tissue
58
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