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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
955
total RNA-seq
867
ChIP-seq
178
DNase-seq
131
ATAC-seq
107
single cell RNA-seq
87
RNA microarray
WGBS
24
pCHi-C
16
small RNA-seq
13
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
snATAC-seq
Assay category
1078
Transcription
867
DNA binding
315
DNA accessibility
13
3D chromatin structure
11
DNA methylation
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
275
August, 2017
242
October, 2019
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
99
August, 2021
82
November, 2017
80
April, 2019
77
February, 2023
74
October, 2018
65
July, 2019
48
December, 2017
40
March, 2020
40
November, 2019
38
May, 2021
25
February, 2020
22
October, 2017
20
November, 2018
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
3
December, 2019
2
January, 2018
2
May, 2022
1
August, 2022
1
May, 2023
Available data
1865
bam
1695
bigWig
1075
tsv
842
bed narrowPeak
561
bigBed narrowPeak
341
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
94
txt
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
9
hic
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2390
Homo sapiens
Biosample type
2398
tissue
614
cell line
524
primary cell
340
in vitro differentiated cells
8
stem cell
Organ
541
connective tissue
482
adipose tissue
438
pancreas
317
liver
265
brain
265
heart
158
bone element
131
blood vessel
131
vasculature
121
limb
110
kidney
81
musculature of body
73
artery
56
eye
43
nerve
23
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2394
AMP
4
T1D
Genome assembly (visualization)
1725
GRCh38
1712
hg19
Lab
2398
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
BIOSAMPLE
ASSAY
2398 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
RNA microarray
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
snATAC-seq
tissue
islet of Langerhans
286
71
1
34
4
1
1
1
1
adipose tissue
382
2
3
1
liver
147
145
2
1
1
1
1
1
bone element
84
heart left ventricle
3
35
3
2
18
1
1
1
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