Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
5
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
65
DNA binding
9
Transcription
7
DNA accessibility
5
3D chromatin structure
Target of assay
50
histone
50
histone modification
31
broad histone mark
19
narrow histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
45
May, 2019
21
October, 2019
6
July, 2019
4
August, 2021
4
March, 2020
3
June, 2019
3
November, 2017
1
February, 2020
Available data
76
bam
64
bigWig
55
bed narrowPeak
54
bigBed narrowPeak
10
tsv
9
bed broadPeak
9
bigBed broadPeak
7
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
87
Homo sapiens
Biosample type
58
tissue
29
primary cell
Organ
834
pancreas
786
liver
676
connective tissue
485
adipose tissue
451
epithelium
382
heart
354
kidney
286
brain
234
vasculature
228
blood vessel
158
bone element
artery
121
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
35
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
87
AMP
Genome assembly (visualization)
66
hg19
58
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
WGBS
month_released!
May, 2021
organ_slims!
artery
BIOSAMPLE
ASSAY
87 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
pCHi-C
tissue
aorta
13
1
1
4
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
Download