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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
7
DNase-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
2
ATAC-seq
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
88
DNA binding
12
Transcription
10
DNA accessibility
5
3D chromatin structure
Target of assay
68
histone
68
histone modification
45
broad histone mark
23
narrow histone mark
17
control
3
RNA binding protein
3
transcription factor
Date released
47
October, 2019
45
May, 2019
6
August, 2021
6
July, 2019
4
March, 2020
3
June, 2019
3
November, 2017
2
February, 2020
Available data
102
bam
85
bigWig
76
bed narrowPeak
74
bigBed narrowPeak
13
tsv
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
116
Homo sapiens
Biosample type
87
tissue
29
primary cell
Organ
892
pancreas
734
liver
677
connective tissue
484
adipose tissue
477
epithelium
heart
354
kidney
284
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
95
musculature of body
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
skeleton
16
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
116
AMP
Genome assembly (visualization)
87
hg19
79
GRCh38
Lab
116
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
WGBS
month_released!
November, 2018
organ_slims!
heart
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
DNase-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
FAIRE-seq
pCHi-C
tissue
tibial artery
23
2
1
1
aorta
13
4
1
1
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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