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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
84
RNA microarray
42
ChIP-seq
27
snATAC-seq
22
ATAC-seq
18
single cell RNA-seq
WGBS
3
snDrop-seq
2
pCHi-C
1
Hi-C
Assay category
563
Transcription
49
DNA accessibility
42
DNA binding
1
3D chromatin structure
Target of assay
33
transcription factor
7
control
2
RNA binding protein
2
chromatin remodeller
Date released
709
February, 2021
406
November, 2017
402
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
96
July, 2019
94
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
606
bam
581
bigWig
553
tsv
89
txt
74
fastq
53
bed narrowPeak
30
bigBed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
744
Homo sapiens
Biosample type
552
tissue
124
cell line
42
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
27
blood
27
bodily fluid
26
epithelium
26
pancreas
8
kidney
8
skeleton
7
spleen
6
limb
4
liver
Project
705
AMP
39
HPAP
Genome assembly (visualization)
604
hg19
598
GRCh38
Lab
705
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
128
inconsistent ontology term
32
audit script error
1
inconsistent control
1
inconsistent replicate
assay_title!
WGBS
BIOSAMPLE
ASSAY
744 results
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total RNA-seq
RNA microarray
ChIP-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
Hi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
spleen
7
kidney
5
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
GM12878
27
EndoC_BH1
26
HepG2
1
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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