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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
46
total RNA-seq
18
small RNA-seq
15
RRBS
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
74
DNA binding
67
Transcription
15
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
32
control
30
histone
30
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
11
narrow histone mark
Date released
709
February, 2021
406
November, 2017
402
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
96
July, 2019
94
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
149
bam
124
bigWig
67
tsv
60
fastq
52
bed narrowPeak
47
bigBed narrowPeak
15
bed bedMethyl
15
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
172
Homo sapiens
Biosample type
139
tissue
33
primary cell
Organ
59
pancreas
41
connective tissue
35
adipose tissue
18
brain
17
heart
15
epithelium
11
kidney
10
vasculature
9
blood vessel
9
liver
9
musculature of body
4
limb
3
artery
2
pericardium
1
eye
Project
172
AMP
Genome assembly (visualization)
138
hg19
118
GRCh38
Lab
172
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_title!
WGBS
BIOSAMPLE
ASSAY
172 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
body of pancreas
33
2
2
subcutaneous adipose tissue
12
4
1
endocrine pancreas
16
omental fat pad
11
4
1
heart left ventricle
2
1
2
+ See 23 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic acinar cell
2
+ See 21 more…
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