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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
total RNA-seq
6
RRBS
3
Hi-C
2
ATAC-seq
1
ChIP-seq
Assay category
7
Transcription
6
DNA methylation
3
3D chromatin structure
2
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
61
September, 2018
52
February, 2023
39
May, 2022
35
October, 2019
33
April, 2018
33
July, 2018
29
August, 2017
26
February, 2021
26
May, 2021
20
June, 2019
19
December, 2017
19
September, 2020
16
November, 2019
13
July, 2019
7
August, 2020
6
August, 2021
6
December, 2019
6
March, 2020
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
12
bigWig
8
bam
8
tsv
6
bed bedMethyl
6
bigBed bedMethyl
2
bed bed3+
2
hdf5
1
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
19
Homo sapiens
Biosample type
14
primary cell
5
cell line
Organ
24
heart
20
brain
20
connective tissue
20
pancreas
19
epithelium
14
musculature of body
14
vasculature
13
adipose tissue
13
blood vessel
13
kidney
12
liver
4
limb
3
artery
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
eye
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
16
AMP
3
T1D
Genome assembly (visualization)
19
hg19
8
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
WGBS
BIOSAMPLE
ASSAY
19 results
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total RNA-seq
RRBS
Hi-C
ATAC-seq
ChIP-seq
primary cell
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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cell line
EndoC_BH1
2
2
1
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