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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
60
ChIP-seq
35
ATAC-seq
WGBS
3
DNase-seq
3
pCHi-C
3
total RNA-seq
Assay category
96
Transcription
60
DNA binding
38
DNA accessibility
Target of assay
35
histone
35
histone modification
20
broad histone mark
20
control
15
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
92
August, 2021
40
May, 2024
36
February, 2023
10
April, 2019
6
May, 2019
5
June, 2019
3
February, 2020
3
March, 2020
2
February, 2021
Available data
98
tsv
78
bed narrowPeak
43
bigWig
23
bam
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
3
bigBed narrowPeak
2
tagAlign
Organism
197
Homo sapiens
Biosample type
192
tissue
3
primary cell
2
cell line
Organ
237
pancreas
225
kidney
197
heart
166
epithelium
161
liver
122
brain
89
bone element
89
connective tissue
69
blood vessel
69
vasculature
59
adipose tissue
48
artery
27
eye
25
limb
22
musculature of body
20
lung
14
blood
bodily fluid
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
197
AMP
Genome assembly (visualization)
260
GRCh38
hg19
Lab
157
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent ontology term
assay_title!
WGBS
organ_slims!
bodily fluid
assembly!
hg19
BIOSAMPLE
ASSAY
197 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
total RNA-seq
tissue
left cardiac atrium
18
40
coronary artery
2
35
1
heart left ventricle
18
6
1
heart right ventricle
17
2
1
right cardiac atrium
18
1
1
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primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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