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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
189
total RNA-seq
23
ATAC-seq
6
DNase-seq
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
214
DNA binding
193
Transcription
29
DNA accessibility
4
3D chromatin structure
2
DNA methylation
1
DNA sequencing
Target of assay
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
194
May, 2020
74
November, 2017
47
August, 2017
40
May, 2022
30
December, 2017
24
August, 2021
9
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
3
November, 2018
2
June, 2019
1
December, 2018
1
February, 2020
Available data
354
bam
288
bigWig
174
tsv
136
fastq
112
bed narrowPeak
86
tagAlign
44
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
11
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
448
Homo sapiens
Biosample type
318
tissue
103
cell line
14
primary cell
13
in vitro differentiated cells
Organ
876
pancreas
638
connective tissue
468
adipose tissue
468
epithelium
448
liver
368
heart
344
kidney
283
brain
225
vasculature
220
blood vessel
159
bone element
136
artery
121
limb
95
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
18
blood
bodily fluid
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
448
AMP
Genome assembly (visualization)
296
hg19
244
GRCh38
Lab
388
AMP-T2D consortium
40
Karen Mohlke, UNC
20
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
assay_title!
WGBS
organ_slims!
bodily fluid
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
448 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
108
167
20
2
1
1
1
1
1
right lobe of liver
8
3
1
2
2
cell line
HepG2
81
14
1
2
2
2
1
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
13
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