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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1566
ChIP-seq
1268
total RNA-seq
386
ATAC-seq
291
single cell RNA-seq
192
DNase-seq
86
RNA microarray
84
snATAC-seq
52
pCHi-C
WGBS
22
Hi-C
18
small RNA-seq
15
RRBS
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
22
3D chromatin structure
Date released
7
March, 2020
6
July, 2019
3
August, 2021
2
October, 2019
1
December, 2018
1
March, 2019
1
March, 2023
1
November, 2019
Available data
13
hic
11
bedpe bed3+
3
bed bed3+
3
bigWig
3
hdf5
1
bedpe
1
fastq
Organism
22
Homo sapiens
Biosample type
16
tissue
in vitro differentiated cells
3
cell line
3
primary cell
Organ
9
pancreas
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
21
AMP
1
ITG
Genome assembly (visualization)
15
hg19
2
GRCh38
Lab
17
AMP-T2D consortium
3
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
inconsistent assembly
assay_title!
WGBS
organ_slims!
epithelium
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
22 results
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Clear Filters
Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
cell line
HepG2
2
Panc1
1
primary cell
astrocyte of the cerebellum
1
brain pericyte
1
chondrocytes
1
See all biosamples
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