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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1035
total RNA-seq
867
ChIP-seq
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1225
Transcription
867
DNA binding
210
DNA accessibility
16
3D chromatin structure
11
DNA methylation
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
273
August, 2017
226
October, 2019
193
May, 2020
165
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
74
October, 2018
59
July, 2019
48
December, 2017
47
September, 2023
40
May, 2021
38
March, 2020
28
May, 2022
25
February, 2020
20
November, 2018
20
November, 2019
19
April, 2020
15
October, 2017
14
February, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
May, 2023
4
November, 2020
2
December, 2019
1
August, 2022
1
March, 2019
Available data
1826
bam
1673
bigWig
1072
tsv
736
bed narrowPeak
558
bigBed narrowPeak
338
fastq
238
tagAlign
211
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2438
Homo sapiens
Biosample type
2447
tissue
572
cell line
554
primary cell
328
in vitro differentiated cells
10
stem cell
Organ
535
connective tissue
476
adipose tissue
439
pancreas
336
liver
261
brain
226
heart
224
kidney
146
bone element
113
limb
93
blood vessel
93
vasculature
80
musculature of body
42
nerve
36
artery
28
eye
22
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2361
AMP
47
KPMP
20
T1D
19
LungMap
Genome assembly (visualization)
1645
GRCh38
1633
hg19
Lab
2264
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
Audit category:
90
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
WGBS
ATAC-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
2447 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
71
1
7
4
3
1
1
4
adipose tissue
382
2
1
liver
167
145
2
1
1
1
1
1
kidney
49
27
13
64
6
1
1
1
bone element
84
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