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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
77
single cell RNA-seq
WGBS
32
total RNA-seq
22
snATAC-seq
Assay category
109
Transcription
99
DNA accessibility
Date released
709
February, 2021
406
November, 2017
402
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
96
July, 2019
94
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
93
zippedFastqFolder
73
bam
69
bigWig
68
fastq
49
tsv
38
bed narrowPeak
7
txt
1
bed bed3+
Organism
208
Homo sapiens
Biosample type
136
primary cell
72
tissue
Organ
102
pancreas
72
epithelium
40
liver
2
connective tissue
2
musculature of body
Project
115
AMP
93
HPAP
Genome assembly (visualization)
88
hg19
49
GRCh38
Lab
93
Klaus Kaestner, Upenn
51
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
assay_title!
WGBS
organ_slims!
lung
BIOSAMPLE
ASSAY
208 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
3
pancreatic beta cell
13
3
pancreatic acinar cell
4
6
pancreatic delta cell
7
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tissue
liver
20
20
islet of Langerhans
18
12
skeletal muscle tissue
1
1
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