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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
5
RRBS
1
ATAC-seq
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
7
May, 2019
5
July, 2019
3
March, 2020
1
January, 2018
1
May, 2022
Available data
61
bigWig
60
bed narrowPeak
50
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
tsv
1
txt
Organism
86
Homo sapiens
Biosample type
74
tissue
12
primary cell
Organ
593
liver
416
pancreas
276
epithelium
262
brain
229
kidney
197
connective tissue
179
heart
167
vasculature
161
blood vessel
114
limb
97
bone element
86
musculature of body
84
adipose tissue
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
23
embryo
23
spleen
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
86
AMP
Genome assembly (visualization)
67
hg19
46
GRCh38
Lab
86
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
WGBS
assay_slims!
Transcription
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
ATAC-seq
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
+ See 2 more…
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
See all biosamples
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