Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
25
DNA binding
9
Transcription
6
3D chromatin structure
5
DNA methylation
2
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
6
control
Date released
26
August, 2017
9
July, 2019
5
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
67
bigWig
60
bed narrowPeak
56
bam
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
48
Homo sapiens
Biosample type
43
tissue
5
primary cell
Organ
804
pancreas
650
connective tissue
475
adipose tissue
428
liver
401
epithelium
251
heart
250
kidney
159
bone element
159
brain
151
vasculature
149
blood vessel
116
artery
55
eye
48
musculature of body
37
embryo
37
limb
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
10
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
26
hg19
6
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
WGBS
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
48 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
Download