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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
25
DNA binding
9
Transcription
6
3D chromatin structure
DNA methylation
2
DNA accessibility
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
6
control
Date released
22
August, 2017
8
July, 2019
5
March, 2020
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2018
1
May, 2019
Available data
67
bigWig
60
bed narrowPeak
56
bam
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
2
bedpe bed3+
2
hic
1
txt
Organism
43
Homo sapiens
Biosample type
39
tissue
4
primary cell
Organ
802
pancreas
649
connective tissue
475
adipose tissue
426
liver
395
epithelium
289
heart
246
kidney
159
bone element
157
brain
150
vasculature
149
blood vessel
116
artery
54
eye
43
musculature of body
37
embryo
37
limb
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
10
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
43
AMP
Genome assembly (visualization)
23
hg19
6
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
WGBS
files.file_type!
bigBed narrowPeak
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
muscle of leg
1
primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
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