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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
108
ChIP-seq
7
ATAC-seq
WGBS
4
DNase-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
406
Transcription
108
DNA binding
11
DNA accessibility
Target of assay
56
histone
56
histone modification
36
broad histone mark
35
control
20
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
51
August, 2017
43
October, 2019
23
October, 2018
12
July, 2019
3
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
482
bam
454
bigWig
406
tsv
41
fastq
40
bed narrowPeak
36
bigBed narrowPeak
8
bed bed3+
8
tagAlign
5
bed broadPeak
4
bigBed broadPeak
1
bedpe bed3+
Organism
527
Homo sapiens
Biosample type
525
tissue
2
primary cell
1
in vitro differentiated cells
Organ
895
pancreas
786
liver
678
connective tissue
485
adipose tissue
477
epithelium
385
heart
354
kidney
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
528
AMP
Genome assembly (visualization)
457
hg19
453
GRCh38
Lab
528
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
WGBS
BIOSAMPLE
ASSAY
528 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
tibial nerve
5
35
1
2
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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