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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
3
DNase-seq
2
Hi-C
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
37
DNA binding
5
DNA accessibility
2
3D chromatin structure
Target of assay
21
histone
21
histone modification
13
broad histone mark
10
control
8
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
21
October, 2019
7
December, 2018
7
January, 2019
7
November, 2018
2
March, 2020
1
October, 2017
Available data
42
bam
29
bigWig
27
bed narrowPeak
26
bigBed narrowPeak
22
fastq
5
bed broadPeak
5
bigBed broadPeak
3
bed bed3+
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
45
Homo sapiens
Biosample type
23
tissue
22
primary cell
Organ
895
pancreas
786
liver
678
connective tissue
485
adipose tissue
477
epithelium
354
kidney
345
heart
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
45
AMP
Genome assembly (visualization)
31
hg19
26
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
WGBS
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
DNase-seq
Hi-C
ATAC-seq
FAIRE-seq
pCHi-C
tissue
spleen
20
1
1
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
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