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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
88
ChIP-seq
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
105
Transcription
88
DNA binding
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
136
May, 2021
45
May, 2020
10
February, 2023
7
March, 2020
Available data
186
bam
186
bigWig
98
tsv
88
bed narrowPeak
84
tagAlign
Organism
198
Homo sapiens
Biosample type
180
primary cell
9
cell line
9
tissue
Organ
13
pancreas
4
epithelium
Project
3556
AMP
227
HPAP
198
T1D
47
KPMP
9
LungMap
3
community
1
ITG
Genome assembly (visualization)
186
GRCh38
186
hg19
Lab
190
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_title!
pCHi-C
siRNA RNA-seq
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
198 results
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total RNA-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
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cell line
EndoC_BH1
2
2
3
2
tissue
islet of Langerhans
7
2
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