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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
Assay category
DNA accessibility
79
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
13
August, 2017
2
October, 2019
Available data
3002
bam
2819
bigWig
1555
tsv
1325
bed narrowPeak
1255
fastq
801
bigBed narrowPeak
398
tagAlign
157
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
62
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
hic
20
bedpe bed3+
8
csv
5
hdf5
3
cool
3
tar
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
79
Homo sapiens
Biosample type
58
cell line
21
primary cell
Organ
58
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
Project
79
AMP
Genome assembly (visualization)
79
hg19
62
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
assay_title!
pCHi-C
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
79 results
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ChIP-seq
cell line
HepG2
58
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
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