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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
total RNA-seq
11
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
DNA accessibility
64
Transcription
1
3D chromatin structure
Date released
58
August, 2021
4
March, 2023
3
May, 2023
Available data
57
txt
1
hic
Organism
61
Homo sapiens
Biosample type
61
tissue
2
cell line
2
stem cell
Organ
61
kidney
Project
61
AMP
4
community
Genome assembly (visualization)
1
hg19
Lab
3310
AMP-T2D consortium
274
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
61
Katalin Susztak, Upenn
47
KPMP
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
assay_title!
pCHi-C
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
65 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
kidney
49
11
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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