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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
DNA binding
35
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
Date released
33
June, 2019
10
July, 2019
4
August, 2017
4
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
41
bigWig
40
bam
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
56
Homo sapiens
Biosample type
52
tissue
4
primary cell
Organ
727
pancreas
526
connective tissue
416
adipose tissue
395
epithelium
300
kidney
256
heart
236
liver
158
bone element
133
vasculature
130
blood vessel
107
artery
66
brain
56
limb
56
musculature of body
52
eye
19
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
vein
4
spleen
2
pericardium
1
pituitary gland
1
skin of body
1
spinal cord
Project
56
AMP
Genome assembly (visualization)
46
hg19
40
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
assay_title!
pCHi-C
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
56 results
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DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
+ See 3 more…
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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