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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
2
small RNA-seq
1
ATAC-seq
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
9
Transcription
6
3D chromatin structure
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
22
August, 2017
8
July, 2019
7
May, 2019
4
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
67
bigWig
60
bed narrowPeak
56
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
8
tsv
2
bedpe bed3+
2
hic
1
txt
Organism
89
Homo sapiens
Biosample type
76
tissue
13
primary cell
Organ
892
pancreas
781
liver
672
connective tissue
483
adipose tissue
471
epithelium
348
kidney
340
heart
282
brain
232
vasculature
227
blood vessel
158
bone element
141
artery
121
limb
89
musculature of body
69
blood
69
bodily fluid
56
eye
43
nerve
37
embryo
22
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
89
AMP
Genome assembly (visualization)
70
hg19
52
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
pCHi-C
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
1
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
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