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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
Assay category
199
DNA accessibility
113
DNA binding
Target of assay
64
histone
64
histone modification
49
transcription factor
36
broad histone mark
28
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
70
November, 2017
38
August, 2017
3
October, 2017
2
October, 2019
Available data
1476
bam
1315
bigWig
1267
bed narrowPeak
786
bigBed narrowPeak
767
fastq
376
tagAlign
113
bed broadPeak
79
bigBed broadPeak
42
bed bed3+
3
tar
1
tagAlign bed3+
Organism
107
Homo sapiens
Biosample type
58
cell line
34
tissue
21
primary cell
Organ
58
liver
15
brain
13
musculature of body
12
pancreas
6
epithelium
6
vasculature
4
blood vessel
2
vein
1
adipose tissue
connective tissue
Project
113
AMP
Genome assembly (visualization)
113
hg19
76
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
assay_title!
pCHi-C
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
pancreas
6
brain
3
cingulate gyrus
2
+ See 3 more…
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
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