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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
Assay category
201
Transcription
123
DNA binding
121
DNA accessibility
52
DNA methylation
7
3D chromatin structure
Target of assay
91
histone
91
histone modification
47
narrow histone mark
44
broad histone mark
25
control
7
transcription factor
6
RNA binding protein
1
chromatin remodeller
Date released
26
August, 2017
24
October, 2019
21
September, 2018
19
December, 2017
13
November, 2019
6
June, 2019
5
May, 2019
4
August, 2021
4
May, 2021
1
March, 2020
Available data
123
bam
95
bigWig
93
bed narrowPeak
66
fastq
32
bigBed narrowPeak
7
tagAlign
3
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
123
Homo sapiens
Biosample type
86
primary cell
22
in vitro differentiated cells
15
cell line
Organ
552
liver
brain
218
pancreas
153
connective tissue
134
heart
129
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
121
AMP
2
T1D
Genome assembly (visualization)
95
hg19
93
GRCh38
Lab
123
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
assay_title!
pCHi-C
organ_slims!
brain
BIOSAMPLE
ASSAY
123 results
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Clear Filters
ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
+ See 4 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
cell line
EndoC_BH1
15
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