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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
419
ChIP-seq
Assay category
419
DNA binding
115
Transcription
31
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
80
control
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
281
November, 2017
39
November, 2018
25
December, 2018
23
October, 2019
17
August, 2021
12
January, 2019
12
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
401
bam
357
fastq
348
bigWig
329
bed narrowPeak
292
bigBed narrowPeak
54
bed broadPeak
54
bigBed broadPeak
20
tagAlign
2
tar
Organism
419
Homo sapiens
Biosample type
879
tissue
419
cell line
269
primary cell
187
in vitro differentiated cells
3
stem cell
Organ
324
liver
50
blood
50
bodily fluid
27
pancreas
14
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
417
AMP
2
T1D
Genome assembly (visualization)
345
hg19
288
GRCh38
Lab
402
AMP-T2D consortium
17
Bing Ren, UCSD
Audit category:
24
inconsistent ontology term
1
inconsistent control
Audit category:
11
missing controlled_by
Audit category:
20
inconsistent control read length
5
inconsistent control run_type
assay_title!
pCHi-C
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
419 results
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Clear Filters
ChIP-seq
cell line
HepG2
324
GM12878
50
EndoC_BH1
14
Panc1
13
smooth muscle cell of the coronary artery
6
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