Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
212
DNase-seq
84
snATAC-seq
5
FAIRE-seq
Assay category
1918
Transcription
1831
DNA binding
301
DNA accessibility
97
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
27
February, 2021
22
May, 2022
16
January, 2021
11
October, 2019
10
April, 2020
10
November, 2018
6
August, 2017
6
August, 2021
2
February, 2023
2
July, 2019
1
August, 2022
1
November, 2020
Available data
214
bam
214
bed narrowPeak
214
bigBed narrowPeak
214
bigWig
206
bed broadPeak
206
bigBed broadPeak
205
bed bed3+
41
fastq
21
zippedFastqFolder
1
tar
1
txt
Organism
300
Homo sapiens
Biosample type
210
tissue
88
primary cell
2
cell line
1
in vitro differentiated cells
Organ
88
kidney
36
limb
34
musculature of body
33
brain
30
heart
21
pancreas
20
epithelium
18
ureter
12
vasculature
10
blood vessel
10
lung
9
connective tissue
8
blood
8
bodily fluid
6
liver
4
artery
4
eye
3
vein
2
adipose tissue
2
nerve
1
spleen
Project
225
AMP
48
HPAP
18
T1D
10
LungMap
Genome assembly (visualization)
207
GRCh38
192
hg19
Lab
219
AMP-T2D consortium
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
4
inconsistent ontology term
assay_title!
pCHi-C
ATAC-seq
BIOSAMPLE
ASSAY
301 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
13
6
1
heart
18
muscle of arm
17
brain
14
muscle of leg
13
+ See 42 more…
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cardiac fibroblast
3
endothelial cell of umbilical vein
2
1
kidney tubule cell
3
+ See 20 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download