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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
88
ChIP-seq
18
snATAC-seq
pCHi-C
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
105
Transcription
88
DNA binding
18
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
136
May, 2021
45
May, 2020
16
January, 2021
12
February, 2023
7
March, 2020
Available data
186
bam
186
bigWig
98
tsv
88
bed narrowPeak
84
tagAlign
Organism
216
Homo sapiens
Biosample type
188
primary cell
19
tissue
9
cell line
Organ
23
pancreas
8
blood
8
bodily fluid
4
epithelium
Project
3741
AMP
275
HPAP
216
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
186
GRCh38
186
hg19
Lab
208
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_title!
pCHi-C
ATAC-seq
BIOSAMPLE
ASSAY
216 results
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total RNA-seq
ChIP-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
+ See 21 more…
tissue
islet of Langerhans
7
2
6
pancreas
4
cell line
EndoC_BH1
2
2
3
2
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