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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
243
total RNA-seq
179
single cell RNA-seq
100
ATAC-seq
58
WGBS
48
snATAC-seq
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
pCHi-C
Assay category
422
Transcription
162
DNA accessibility
62
DNA methylation
1
3D chromatin structure
Date released
158
May, 2022
106
August, 2017
76
February, 2023
59
September, 2020
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2018
18
November, 2018
15
February, 2018
8
October, 2017
7
August, 2020
5
January, 2018
5
January, 2019
5
September, 2017
3
August, 2018
3
June, 2018
2
October, 2018
1
December, 2018
1
March, 2019
Available data
1813
bam
1779
bigWig
1569
tsv
500
fastq
492
bed narrowPeak
241
bigBed narrowPeak
218
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
hic
20
bedpe bed3+
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
1
bedpe
1
tar
1
vcf
Organism
652
Homo sapiens
Biosample type
467
primary cell
157
tissue
20
in vitro differentiated cells
7
cell line
1
stem cell
Organ
404
pancreas
265
epithelium
13
liver
10
connective tissue
6
adipose tissue
5
embryo
4
spleen
3
brain
2
musculature of body
Project
331
AMP
321
HPAP
Genome assembly (visualization)
304
hg19
299
GRCh38
5
hg18
Lab
321
Klaus Kaestner, Upenn
305
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
7
inconsistent ontology term
assay_title!
pCHi-C
ChIP-seq
BIOSAMPLE
ASSAY
652 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
DNase-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
52
12
35
31
pancreatic beta cell
21
12
23
16
exocrine cell
39
pancreatic acinar cell
4
9
9
+ See 14 more…
tissue
islet of Langerhans
103
20
1
1
body of pancreas
4
2
2
liver
1
2
1
spleen
1
2
1
adipose tissue
3
+ See 7 more…
in vitro differentiated cells
pancreatic endoderm
4
1
definitive endodermal cell
2
1
primitive gut cell
2
1
embryonic stem cell
2
endocrine cell
2
+ See 4 more…
cell line
HepG2
5
1
1
stem cell
hESC
1
See all biosamples
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