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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
504
ATAC-seq
84
snATAC-seq
DNase-seq
Assay category
1918
Transcription
1030
DNA binding
588
DNA accessibility
97
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
26
November, 2019
19
October, 2019
16
January, 2021
11
May, 2023
10
April, 2020
8
October, 2017
7
August, 2020
6
July, 2019
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
1
August, 2022
1
November, 2020
Available data
283
bed narrowPeak
180
bam
141
bigWig
90
fastq
64
xls
60
zippedFastqFolder
bigBed narrowPeak
14
tsv
12
bed bed3
7
bed bedgraph
5
bed bed3+
4
txt
2
bed broadPeak
1
tar
Organism
587
Homo sapiens
Biosample type
285
tissue
234
primary cell
40
in vitro differentiated cells
29
cell line
Organ
141
pancreas
81
epithelium
81
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
22
liver
21
connective tissue
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
limb
4
adipose tissue
4
brain
2
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
452
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
235
hg19
210
GRCh38
Lab
318
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
42
inconsistent ontology term
29
audit script error
1
inconsistent replicate
assay_title!
pCHi-C
DNase-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
588 results
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Clear Filters
ATAC-seq
snATAC-seq
tissue
kidney
75
6
islet of Langerhans
68
7
coronary artery
36
liver
20
retina
15
+ See 29 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
+ See 35 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
6
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
See all biosamples
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