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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
934
total RNA-seq
687
ChIP-seq
231
ATAC-seq
174
single cell RNA-seq
DNase-seq
87
RNA microarray
28
snATAC-seq
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
1124
Transcription
687
DNA binding
261
DNA accessibility
25
DNA methylation
16
3D chromatin structure
Target of assay
554
histone
554
histone modification
296
narrow histone mark
258
broad histone mark
120
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
234
October, 2019
229
August, 2021
193
May, 2020
118
July, 2018
115
May, 2019
108
August, 2017
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
47
September, 2023
42
May, 2022
40
May, 2024
40
November, 2019
39
May, 2021
25
February, 2020
20
March, 2020
19
April, 2020
16
October, 2018
15
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1730
bam
1595
bigWig
1056
tsv
807
bed narrowPeak
384
bigBed narrowPeak
fastq
238
tagAlign
157
txt
64
xls
37
bed broadPeak
29
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2205
Homo sapiens
Biosample type
2207
tissue
612
primary cell
249
in vitro differentiated cells
227
cell line
2
stem cell
Organ
502
connective tissue
443
adipose tissue
287
pancreas
283
heart
276
liver
231
kidney
226
brain
158
bone element
127
blood vessel
127
vasculature
86
limb
69
artery
49
eye
47
musculature of body
41
nerve
19
lung
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2111
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1412
GRCh38
1310
hg19
Lab
1882
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
27
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
88
inconsistent ontology term
9
audit script error
assay_title!
pCHi-C
DNase-seq
files.file_type!
fastq
organ_slims!
vein
BIOSAMPLE
ASSAY
2207 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
3
islet of Langerhans
195
43
48
7
3
1
4
liver
167
78
20
1
2
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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