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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
552
ChIP-seq
189
total RNA-seq
23
ATAC-seq
DNase-seq
5
WGBS
4
Hi-C
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
552
DNA binding
193
Transcription
23
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
193
May, 2020
63
December, 2017
53
August, 2017
50
November, 2018
40
May, 2022
35
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
Available data
676
bam
617
bigWig
462
fastq
436
bed narrowPeak
353
bigBed narrowPeak
172
tsv
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
7
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
782
Homo sapiens
Biosample type
399
cell line
356
tissue
15
in vitro differentiated cells
12
primary cell
Organ
937
pancreas
782
liver
670
connective tissue
505
epithelium
487
adipose tissue
320
heart
271
kidney
252
brain
224
vasculature
220
blood vessel
158
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
53
eye
41
nerve
37
embryo
23
spleen
20
vein
lung
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
782
AMP
Genome assembly (visualization)
619
hg19
526
GRCh38
Lab
711
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
assay_title!
pCHi-C
DNase-seq
organ_slims!
lung
BIOSAMPLE
ASSAY
782 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
378
14
1
1
2
2
1
tissue
liver
145
167
20
3
1
1
1
1
right lobe of liver
10
3
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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