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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
29
ATAC-seq
24
total RNA-seq
6
DNase-seq
pCHi-C
1
RRBS
Assay category
40
DNA binding
35
DNA accessibility
24
Transcription
1
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
12
control
11
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
59
October, 2019
31
February, 2023
7
June, 2019
2
February, 2020
1
July, 2019
Available data
60
bed narrowPeak
49
bam
37
bigWig
32
bigBed narrowPeak
10
tsv
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
100
Homo sapiens
Biosample type
95
tissue
5
primary cell
Organ
934
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
346
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
94
musculature of body
61
blood
61
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
18
ureter
16
skeleton
9
lung
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
100
AMP
Genome assembly (visualization)
65
hg19
37
GRCh38
Lab
100
AMP-T2D consortium
assay_title!
pCHi-C
snATAC-seq
BIOSAMPLE
ASSAY
100 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
RRBS
tissue
tibial nerve
35
1
5
2
retina
15
3
3
islet of Langerhans
2
1
14
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
3
1
1
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