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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
22
DNase-seq
19
total RNA-seq
5
ChIP-seq
pCHi-C
1
RRBS
Assay category
50
DNA accessibility
19
Transcription
5
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
25
June, 2019
17
October, 2019
1
February, 2020
1
July, 2019
Available data
51
bed narrowPeak
25
bam
24
bigBed narrowPeak
24
bigWig
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
75
Homo sapiens
Biosample type
70
tissue
5
primary cell
Organ
934
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
346
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
94
musculature of body
61
blood
61
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
18
ureter
16
skeleton
9
lung
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
75
AMP
Genome assembly (visualization)
52
hg19
24
GRCh38
Lab
75
AMP-T2D consortium
assay_title!
pCHi-C
snATAC-seq
BIOSAMPLE
ASSAY
75 results
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ATAC-seq
DNase-seq
total RNA-seq
ChIP-seq
RRBS
tissue
retina
15
3
3
islet of Langerhans
1
14
2
pigmented layer of retina
12
2
renal pelvis
10
left renal pelvis
4
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primary cell
retinal pigment epithelial cell
1
3
1
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