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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
100
ChIP-seq
22
ATAC-seq
3
DNase-seq
3
Hi-C
3
WGBS
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
188
Transcription
100
DNA binding
25
DNA accessibility
4
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
58
histone
58
histone modification
41
narrow histone mark
31
control
17
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
193
May, 2020
40
May, 2022
35
August, 2021
26
August, 2017
10
July, 2019
7
October, 2019
5
December, 2019
2
February, 2021
2
June, 2019
2
March, 2020
1
February, 2020
Available data
681
bam
622
bigWig
fastq
441
bed narrowPeak
358
bigBed narrowPeak
172
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
12
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
323
Homo sapiens
Biosample type
277
tissue
32
cell line
14
primary cell
Organ
579
connective tissue
463
pancreas
446
adipose tissue
390
heart
346
kidney
323
liver
267
epithelium
263
brain
229
vasculature
226
blood vessel
158
bone element
141
artery
122
limb
92
musculature of body
57
eye
43
nerve
22
vein
18
ureter
16
skeleton
10
embryo
9
lung
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
blood
1
bodily fluid
1
lymph node
1
skin of body
1
spinal cord
Project
323
AMP
Genome assembly (visualization)
234
hg19
188
GRCh38
Lab
252
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
assay_title!
pCHi-C
snATAC-seq
files.file_type!
fastq
BIOSAMPLE
ASSAY
323 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
78
20
1
2
1
1
right lobe of liver
3
1
1
2
cell line
HepG2
9
18
1
1
2
1
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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